PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054325.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 152aa    MW: 16863.9 Da    PI: 4.3025
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054325.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-0999126229
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCC CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPk 29 
                   r++h  +Er+RR+++N+ ++ Lr+l+P 
  EcC054325.40  99 RMSHITVERNRRKQMNEHLSVLRSLMPC 126
                   99*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-896127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.69E-997131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.11897152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-897131No hitNo description
PfamPF000108.8E-799126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016987Molecular Functionsigma factor activity
GO:0022857Molecular Functiontransmembrane transporter activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MLCDSMFFED PEFVDTTFGG GAGGDDLFSI LESLDAEFPL PANPPPPPPP LPALDETAVF  60
GSKECDEASS PKSKRQKVMN GGGSCSDYEN QQDGQQQNRM SHITVERNRR KQMNEHLSVL  120
RSLMPCFYVK RIGVECQLSA EELAQQIQQT FC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198109RMSHITVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024801.14e-90PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C72e-27SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A059DJL42e-94A0A059DJL4_EUCGR; Uncharacterized protein
STRINGPOPTR_0015s06160.15e-28(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.15e-26bHLH family protein